PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G275600.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 473aa    MW: 51949.6 Da    PI: 5.6417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G275600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11293335754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Gorai.001G275600.2 293 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 335
                         79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.866286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-17289357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9292335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.59E-13293339No hitNo description
Gene3DG3DSA:4.10.280.101.9E-15293348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MVLGAANGLV WMDGEGEEEE DAVSSWTPNI NNQIQSKQDD FTMPFKSVLD AYWYMNPAMN  60
QDPHIRELGF VDNNLLLHHP LDSSASCSPS QPFTLEPHPF LPPKPCFSSL LCNSPFDFAS  120
ETAFQPNQTP NFMGFPPTQF STPDFSSSSD FQGPRLFTAT ENASAFSGGF EGVDASGNAV  180
FVNRAKILKP LEVFPSVGSQ PTLFQKRAAM RQGSGVADER RNLDVSDGKR QRHEQGEIEE  240
ASFDVSGLNY DSDDCKLEEK AKNGGCNSNA TSTLTAGGDH KGKKKGMPAK NLMAERRRRK  300
KLNDRLYMLR SVVPKISKMD RASILGDAID YLKELLQRIN DLHTELESTP PGSFMPPSSS  360
CHPLTPTPPT LPGRVKEELC PSSFSSPKNQ PPKVEVRLRE GRAVNIHMPG LLLSTMRALD  420
NLGLDIHQAV ISCFNGFALD VFRAEQCREG QDVLPEQIKA VLLDSAGFHG IM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282300KKKGMPAKNLMAERRRRKK
2294301ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446526.10.0PREDICTED: transcription factor ICE1-like isoform X2
SwissprotQ9LSE21e-142ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0B0NQC30.0A0A0B0NQC3_G
STRINGVIT_14s0068g01200.t011e-178(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.11e-117bHLH family protein